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When we eat food, we eat all the microbes that live on and in the food. But how many microbes do we eat daily? An interesting study was published a few years ago that tried to answer this question. The researchers found that the average American adult ingests between 1 million to over 1 billion microbes every day!

The University of California researchers conducted the study in 2014 by analyzing meals representing three typical dietary patterns: 1) the average American diet (lots of convenience foods) (2) the USDA recommended diet (emphasis on fruits and vegetables, lean meat, dairy, and whole grains), and 3) vegan diet (excludes all animal and dairy products).

They found that Americans likely consume between one million to about 1.3 billion live microbes daily from foods and beverages.  The highest numbers (3-fold higher) were in the USDA recommended meal plan, because it involved 2 meals with fermented foods (that had not been heat-treated or pasteurized, which kill many bacteria). Fresh produce also has high numbers of bacteria (e.g., an apple has 100 million bacteria!).

Fermented foods (e.g. kimchi, sauerkraut, yogurt, kefir, traditional pickles, kombucha, natto, tempeh, miso) are loaded with microbial species. Recent research shows that eating a serving or 2 of fermented foods daily is a quick way to improve health (by lowering inflammation) and increasing the diversity of bacterial species in the gut microbiome.

Ingesting higher numbers of microbes from foods is desirable  - because having more species in the gut is considered a sign of health. Some of the microbes we ingest join our existing gut microbes, but others just pass through our gut and leave (the "transient microbiome"). Research finds that microbes can have beneficial effects even as they pass through.

Excerpts from the Lang, Eisen, Zivkovic study (2014) study, from Peer Journal: The microbes we eat: abundance and taxonomy of microbes consumed in a day's worth of meals for three diet types.

...Little is known about the effects of ingested microbial communities that are present in typical American diets, and even the basic questions of which microbes, how many of them, and how much they vary from diet to diet and meal to meal, have not been answered.   ...continue reading "We Eat Millions Of Microbes Each Day"

Antibiotics can be life-saving, but there are also unintended consequences. One of them is that they disrupt and alter the gut microbiome (the microbial community of the millions of microbes living in the intestines). A large study found that use of antibiotics is linked to a higher risk of colon cancer 5 to 10 years later.

The researchers thought this was due to the antibiotics having negative effects on the gut microbiome. Antibiotics reduce numbers of beneficial bacteria in the intestines, while allowing bacteria linked to colorectal cancer to increase.

Researchers at Unea Univ. in Sweden compared 40,545 colon cancer cases to 202,720 controls (no cancer), and found that as antibiotic use increased, colon cancer increased in those persons during the next 10 years. It is unknown what happens after 10 years, because that is when the study ended. Interestingly, in women - increased use of antibiotics was linked to a lower incidence of rectal cancer.

The researchers analyzed the results with respect to different classes  of antibiotics, and found the strongest association with the use of quinolones, sulfonamides, and trimethoprims. These antibiotics have an effect on bacterial diversity - specifically allowing anaerobic Fusobacteria and Bacteroidetes species to live and become more abundant. Other studies also support the view that Fusobacteria (e.g., Fusobacterium nucleatum) and Bacteroidetes species contribute to colorectal cancer development.

What to do? To increase beneficial species in the gut and lower levels of inflammation in the body, studies support eating a diet rich in fruits, vegetables, whole grains, nuts, seeds, legumes, and fish - which also results in a high fiber intake (e.g., Mediterranean diet). Also, to quickly improve the diversity of microbes in the gut (a sign of health!) and to lower inflammation in the body, increase your intake of fermented foods.

Fermented foods include: yogurt, buttermilk, sour cream, cheese, kefir, fermented vegetables, kimchi, natto, miso, sauerkraut, traditional pickles, traditional sourdough bread, apple cider vinegar, and kombucha. To quickly improve the gut microbiome, try to eat six 1/2 cup servings each day for a few months.

From Science Daily: Antibiotics linked to increased risk of colon cancer

There is a clear link between taking antibiotics and an increased risk of developing colon cancer within the next five to ten years. This has been confirmed by researchers at Umeå University, Sweden, after a study of 40,000 cancer cases. The impact of antibiotics on the intestinal microbiome is thought to lie behind the increased risk of cancer.  ...continue reading "Antibiotics and Colon Cancer"

It has been known for a while that eating fermented foods and high fiber foods is healthy for us. A recent study confirms this view. Researchers at the Stanford Univ. of Medicine found that eating fermented foods actually reduces inflammation and increases the diversity of gut microbes (gut microbiome).

Researchers randomly assigned volunteers to one of 2 groups for 10 weeks: the fermentation foods group, and the high fiber group. Surprisingly, the group eating the high fiber diet for 10 weeks did not have changes in microbial diversity or changes in the 19 inflammatory markers studied. Instead, the researchers reported that the high-fiber diet "changes microbiome function and elicits personalized immune responses".

The fermented foods group ate a diet rich in yogurt, kefir, fermented cottage cheese, kimchi and other fermented vegetables (e.g. sauerkraut, traditional dill pickles), vegetable brine drinks, and kombucha tea. Each day they ate 6 servings (1/2 cup = 1 serving generally). The high fiber diet was rich in legumes, seeds, whole grains, nuts, vegetables, and fruits (increased their fiber intake from about 22 grams per day to 45 grams).

The fermented foods group ate six servings daily (e.g. 1/2 cup yogurt, kefir, fermented cottage cheese, kimchi, sauerkraut, traditional dill pickles, and kombucha tea). The high fiber group increased their fiber intake from about 22 grams per day to 45 grams, by eating a diet rich in legumes, seeds, whole grains, nuts, vegetables, and fruits.

High-fiber diets are associated with numerous health benefits such as lower rates of numerous chronic diseases and mortality. The consumption of fermented foods can help with weight maintenance and may decrease the risk of diabetes, cancer, and cardiovascular disease.

From Futurity: Fermented Food Diet Boosts Microbiome and Cuts Inflammation

In a clinical trial, 36 healthy adults were randomly assigned to a 10-week diet that included either fermented or high-fiber foods. The two diets resulted in different effects on the gut microbiome and the immune system. 
...continue reading "Fermented Foods Are Good For Your Gut Microbiome"

Could this be true? Eating fermented foods linked to fewer social anxiety symptoms? Fifteen years ago before the world of bacteria could be explored with state of the art genetic tests, this would have sounded too woo-woo. And now we say - could be. Next the researchers will test an experimental version of this study to see if they find causation. Right now all we can say they are linked or that we see an association.

But note that exercise also reduced social anxiety (this was also a finding in other studies). From Science Daily:

Decreased social anxiety among young adults who eat fermented foods

A possible connection between fermented foods, which contain probiotics, and social anxiety symptoms, is the focus of recent study...The researchers found that young adults who eat more fermented foods have fewer social anxiety symptoms, with the effect being greatest among those at genetic risk for social anxiety disorder as measured by neuroticism. "It is likely that the probiotics in the fermented foods are favorably changing the environment in the gut, and changes in the gut in turn influence social anxiety," said Hilimire. "I think that it is absolutely fascinating that the microorganisms in your gut can influence your mind."

The researchers designed a questionnaire that was included in a mass testing tool administered in the university's Introduction to Psychology courses during the fall 2014 semester; about 700 students participated. The questionnaire asked students about the fermented foods over the previous 30 days; it also asked about exercise frequency and the average consumption of fruits and vegetables so that the researchers could control for healthy habits outside of fermented food intake, said Hilimire.

"The main finding was that individuals who had consumed more fermented foods had reduced social anxiety but that was qualified by an interaction by neuroticism. What that means is that that relationship was strongest amongst people that were high in neuroticism," Hilimire said.The secondary finding was that more exercise was related to reduced social anxiety

"However, if we rely on the animal models that have come before us and the human experimental work that has come before us in other anxiety and depression studies, it does seem that there is a causative mechanism," said Hilimire. "Assuming similar findings in the experimental follow-up, what it would suggest is that you could augment more traditional therapies (like medications, psychotherapy or a combination of the two) with fermented foods -- dietary changes -- and exercise, as well."

It is now more than 69 weeks since I first successfully started using kimchi to treat the chronic sinusitis that had plagued me (and my family) for so many years. I originally reported on the Sinusitis Treatment on Dec. 6, 2013 (the method is described there) and followed up on Feb. 21, 2014.

Based on the sinus microbiome research of N. Abreu et al (from Sept. 2012 in Sci.Transl.Med.) that discussed Lactobacillus sakei as a sinusitis treatment, I had looked for a natural source of L.sakei and found it in kimchi. Since dabbing the kimchi juice in our nostrils as needed, all 4 of us are still free of chronic sinusitis and off all antibiotics at close to a year and a half (I'm optimistic). So how is year two shaping up?

Well, it is different and even better than year one. Much of the first year seemed to be about needing to build up our beneficial bacteria sinus community (sinus microbiome) through kimchi treatments, eating fermented foods (such as kimchi, kefir, yogurt), whole grains, vegetables, and fruits. And of course not having to take antibiotics helped our sinus microbial community.

But now in year two we notice that we absolutely don't need or want frequent kimchi treatments - even when sick. Daily kimchi treatments, even during acute sinusitis (after a cold), actually seems to be too much and makes us feel worse (for ex., the throat becomes so dry, almost like a sore throat). But one treatment every 2 or 3 days while sick is good. In fact, this year we have done so few treatments, that even when ill, each time the sick person stopped doing kimchi treatments before he/she was fully recovered, and any sinusitis symptoms kept improving on their own until full recovery! Amazing!

To us, this is a sign that all of us have much improved sinus microbiomes from a year ago. And interestingly, we are getting fewer colds/viruses than ever.  Our guiding principle this year is: "Less is more." In other words, at this point only do a kimchi sinus treatment when absolutely needed, and then only do it sparingly. Looking back, we think we should have adopted the "less is more" last year after the first 6 months of kimchi treatments.

The other thing we've done is cut back on daily saline nasal irrigation, especially when ill and doing kimchi treatments. We've started thinking that the saline irrigation also flushes out beneficial bacteria.

The conclusion is: YES, a person's microbiome can improve, even after years or decades of chronic sinusitis. It is truly amazing and wonderful to not struggle with it, and to feel normal.

(UPDATE: See Sinusitis Treatment Summary page and The Best Probiotic For Sinus Infections for more information, more products one can use, and more L. sakei treatment information. We are using the high quality refrigerated product Lacto Sinus these days.)

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SUMMARY OF TREATMENT METHOD USING KIMCHI

The following is a quick summary of the method we use (see Sinusitis Treatment Summary page).We use live (fermented and not pasteurized) vegan (no seafood added) kimchi. Choosing vegan (no seafood added) kimchi is a personal preference. Lactobacillus sakei is found in meat, seafood, and some vegetables.

Treatment Method: 1) Wash hands, and then use a clean teaspoon to put a little juice from the kimchi jar into a small clean bowl. 2) Dip finger in the kimchi juice and dab it or smear it along the insides of one nostril (about 1/2" into the nostril). 3) Dip finger in kimchi juice again and repeat in other nostril. 4) Do this several times. If I needed to blow my nose at this point I would, and afterwards I would put more kimchi juice up each nostril (again repeating the procedure) and then not blow my nose for at least an hour (or more). 5) Afterwards, any unused kimchi in the little bowl was thrown out and not replaced in the main kimchi jar. (Note: Put the main kimchi jar back in the refrigerator. Also, once opened, take kimchi juice from it for no more than 6 days.)

My rationale was that I was inhaling the bacteria this way and that it would travel up the nasal passages on their own to my sinuses. I did this regimen once or twice a day initially until I started feeling better, then started doing it less frequently, and eventually only as needed.